On 23 September 2011 23:21, Joyce Chen <[log in to unmask]> wrote:

Hello,

I want to generate confound files for csf and wm (to regress them out in my resting state connectivity analysis), but am unsure what to do with the outputs of FAST. Would I use fslmeants to generate their time courses and use the output text files?

That sounds sensible. You could use the --no_bin option in fslmeants and use the probability maps from FAST.

Eugene

Thanks in advance,
Joyce