Dear Dave
I am able to see the FSL GUI after ran the . .
bash_profile.
Thanks
Supreet
On Tue, Sep 27, 2011 at 12:14 PM, David Flitney <[log in to unmask]>wrote:
> The commands in .bash_profile need to be run before you try to execute any
> of the FSL commands. Assuming you've checked to make sure that a new shell
> isn't correctly configured (start a new shell and see if, say, Feat works)
> then you need to copy the FSL setup lines into your shell's startup file so
> it is run for each new shell. That should do it.
>
> On 27 Sep 2011, at 16:53, Supreet kaur wrote:
>
> > Hi Dave,
> > I just entered . .bash_profile in my terminal window,
> then a fish-bone window popped up
> > and then changed into FSLVIEW (3.1.8) plane window with file, tools,
> window on top..
> > Is it the actual fsl window ?? is it ready to go now?
> >
> > I'll appreciate your feedback on this.
> > Thanks
> > Supreet kaur
> > Biomedical engineer,
> > Nationwide Childrens Hospital,
> > Columbus, OH
> > (614)355-3509
> >
> > On Tue, Sep 27, 2011 at 11:41 AM, David Flitney <[log in to unmask]>
> wrote:
> > Perhaps your .bash_profile isn't being sourced during your login? Try the
> following:
> >
> > . .bash_profile
> >
> > Note. That is "dot space dot bash_profile"
> > then try...
> >
> > fslview
> >
> >
> > On 27 Sep 2011, at 16:38, Supreet kaur wrote:
> >
> > > Hello Kay,
> > > Thanks for your prompt reply. When I try to input
> the commands in the terminal window for fsl GUI, it doen't
> > > open up the FSL GUI (with the fish bone). Please see my commands below:
> > >
> > > [fsl@localhost fsldoc]$ fslview
> > > bash: fslview: command not found
> > > [fsl@localhost fsldoc]$
> > > your help will be appreciated.
> > > Thanks,
> > > Supreet
> > >
> > > On Tue, Sep 27, 2011 at 11:34 AM, Benjamin Kay <[log in to unmask]>
> wrote:
> > > On Tuesday, September 27, 2011 11:15:01 you wrote:
> > > > Dear fsl experts,
> > > > I am having a FSL installation problem and
> have
> > > > been struggling hard since last week..
> > > > I have downloaded the VMware virtual environment. And it has
> installed
> > > > fsl-4.1.8-centos5_32.tar.gz file and fsl installer.sh
> > > > its desktop. But once i try to install the FSL , it gives me an error
> > > > commands as shown:
> > > >
> > > > [fsl@localhost fsldoc]$ bash fsl_installer.sh
> > > > FSL install script
> > > > ==================
> > > >
> > > > Looking for FSL tarball in the current directory...
> > > > ***************************************************************
> > > > No FSL tarball specified, assuming you want me to install
> > > > /home/fsl/Desktop/fsldoc/fsl-4.1.8-centos5_32.tar.gz
> > > > from the current directory.
> > > > ***************************************************************
> > > >
> > > > Where would you like to install FSL to? [/usr/local] /home/fsl/
> > > >
> > > > Checking OS release ...
> > > > [OK]
> > > > Checking CPU type...
> > > > [OK]
> > > > Checking install file...(this may take several minutes)
> > > > [Skipped]
> > > > Installing FSL from
> /home/fsl/Desktop/fsldoc/fsl-4.1.8-centos5_32.tar.gz
> > > > into /home/fsl/...
> > > > [OK]
> > > > Patching environment
> > > > .bash_profile already contains a FSLDIR definition which is
> wrong.\nFixing
> > > > FSLDIR configuration...
> > > > '/home/fsl/.bash_profile' updated with new FSLDIR definition.
> > > > [fsl@localhost fsldoc]$
> > > > Your help will be highly appreciated
> > >
> > > It looks like installation failed during a previous attempt but worked
> this
> > > time. Have you tried running any fsl commands to see if they work? If
> you
> > > simply run "fsl" from the commandline you ought to get an GUI.
> > >
> > >
> > >
> > > --
> > > Sincerely,
> > >
> > > Supreet kaur
> > >
> >
> > --
> > Dave Flitney, IT Manager
> > Oxford Centre for Functional MRI of the Brain
> > E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717
> > URL: http://www.fmrib.ox.ac.uk/~flitney
> >
> >
> >
> > --
> > Sincerely,
> >
> > Supreet kaur
> >
>
> --
> Dave Flitney, IT Manager
> Oxford Centre for Functional MRI of the Brain
> E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717
> URL: http://www.fmrib.ox.ac.uk/~flitney
>
--
Sincerely,
Supreet kaur,
Nationwide Childrens Hospital,
Columbus, OH
(614)355-3509
