looks like this script was edited with a word processor and contains formating that are causing problems as ascii text file. Open this file again with a word processor, copy it into a plain ascii text editor and save t again (as plain text). Do not edit programs with a Word processor.


hope this helps,
wolf


Leslie Engineering wrote:

Sorry :)

So this is what I get :


bash-3.2$ chmod +x script_name.sh bash-3.2$ ./script_name.sh ./sta.sh: line 1: {rtf1ansiansicpg1252cocoartf1038cocoasubrtf350: command not found
./sta.sh: line 2: syntax error near unexpected token `}'
./sta.sh: line 2: `{\fonttbl\f0\fswiss\fcharset0 Helvetica;}'



I don't know how to interpret!

On Tue, Aug 2, 2011 at 10:10 AM, Cunningham, Dustin <[log in to unmask] <mailto:Dustin.Cunningham@osumc.edu>> wrote:

   It looks like your file is a bash shell script. I think you can
   just give it executive privileges and run it in the terminal.

   try this:

   chmod +x filename
   ./filename
   ________________________________________
   From: FSL - FMRIB's Software Library [[log in to unmask]

   <mailto:[log in to unmask]>] On Behalf Of Leslie Engineering
   [[log in to unmask] <mailto:leslieengineering@GMAIL.COM>]

   Sent: Tuesday, August 02, 2011 9:27 AM

   To: [log in to unmask] <mailto:[log in to unmask]>

   Subject: [FSL] running a script with FSL

   A colleague sent a single trial analysis script that he says "runs
   with FSL 4.0 and above"

   How do you run a script with fsl?

   I set the path in xterm:

   export PATH="$PATH:~/scripts_folder"

   and tried to source the file

   source script_name.sh

   (clearly computers are not like the back of my hand...)

   Is there something in the fsl gui where I can automatically select
   the script.. because I am unable to do it in the terminal prompt.