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Have you installed the VMware player as well? You have to open the FSL_vm using the VMware player and then run the fsl_installer.sh. Follow the step by step procedure described in the "FSLvm installation" section of the webpage given below. You should not have any problems. I did the same some time ago and had no problems. http://www.fmrib.ox.ac.uk/fsl/fsl/windows.html Goodluck!