Print

Print


Dear Jan
I would recommend running the following protocol on your spherulites. Just pretend that they are crystals :)
This was posted some time ago on the ccp4bb.
best regards
Savvas

On Tue, Nov 2, 2010 at 9:15 AM, Kenneth Verstraete <
[log in to unmask]> wrote:

> Hi Ivan,
>
> there are several tests (e.g. Izit dye, crush test) you can do discern
> protein from salt crystals but what was always very informative to me (and
> certainly in the case of complexes) is a silver-stained SDS-PAGE gel of the
> crystals using the following protocol:
>
> - select a drop which contains some substantial crystalline material. The
> crystals can be many and small (crystal shower) or few and large.
> - prepare a PCR-tube with eg. 50 microliter stabilizing buffer (mother
> liquor containing a 10% higher concentration of precipitant)
> - transfer all the crystalline material from the drop into the PCR-tube
> using a pipet (use stabilizing buffer from the PCR tube to collect all
> crystals)
> - centrifuge the PCR-tube at low speed for 30-60 sec and observe the
> crystals under the microscope. They should be at the bottom of the PCR-tube.
> - Remove as much as supernatant as you can (make sure not to remove your
> crystals), add stabilizing buffer to wash the crystals, and centrifuge again
> - repeat this washing protocol a few times
> - after the final washing step, add Laemli-buffer to the crystals and use
> this sample to load the SDS-PAGE gel
> - include a positive (eg. solubilize another drop directly in
> Laemli-buffer) and a negative (final washing buffer) control
> - use silver staining to visualize the protein
>
> This always works for me. If you don't see a band at this point I would be
> worried that it is salt. You could then choose to do a Western blot instead
> of silver staining to increase the sensitivity. Make sure to include control
> samples then.
>
> Kind regards,
>
> Kenneth Verstraete
> L-PROBE
> Ghent University
> Belgium

On 24 Aug 2011, at 20:05, Jan van Agthoven wrote:

Dear all,

I recently obtained some spherulites while trying to crystallize my protein. The spherulites are manually reproducible, but changing pH, protein concentration, and salt concentration does not result in crystal formation. Microseeding with crushed spherulites isn't a solution either as it only yields new spherulites. Next stepp is the use of an optimization kit but I have a limited amount of material, and I start doubting that these are protein spherulites, as the spherulites are not particularly soft. The condition contains 15% PEG 3350 and 200 mM NaCl. Does anyone know if PEG 3350 forms easily spherulites around that concentration?


Thanks,