 |
 |
[summer break flame] I'm sure there are a lot more computer admins than crystallographers who prefer high-tech over fancyness - aka outlook usually marking my signed(!) emails as spam ;-) And, yes, I know that both thunderbird/enigmail and kmail combine both very elegantly, but with mutt I can simply use an ssh-client to read my email from anywhere in the world without having to worry too much about security whereas I shall not configure some internet-cafe's email client with my credentials to read my mail in the absence of a private internet connection.. [/summer break flame] Cheers, Tim On Wed, Jul 06, 2011 at 11:09:46AM +0200, Flip Hoedemaeker wrote: > Leave it to the crystallographers to be the last on the Planet with > text-only email readers.... Just before the ccp4bb will migrate to > google+ :) > > Flip > > Op 7/6/2011 10:27, Tim Gruene schreef: > >Dear Boaz (and others) > > > >it immensly improves readability of your emails if you can ask your email client > >to also include a plain text version of your email on top of the html-version > >;-) > > > >Cheers, > > > >Tim > > > >On Tue, Jul 05, 2011 at 05:55:28PM +0000, Boaz Shaanan wrote: > >><html dir="ltr"> > >><head> > >><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-8-i"> > >><style type="text/css" id="owaParaStyle"></style> > >></head> > >><body style="word-wrap:break-word" fpstyle="1" ocsi="0"> > >><div style="direction: ltr;font-family: Arial;color: #0000FF;font-size: 10pt;">Hi, > >><div><br> > >></div> > >><div>The best place to pose this question would be the APBS bb which you can join from this site:</div> > >><div><br> > >></div> > >><div><a href="http://www.poissonboltzmann.org/apbs/">http://www.poissonboltzmann.org/apbs/</a><br> > >><div><br> > >><div style="font-family:Tahoma; font-size:13px"> > >><div>You may also check the FAQ there, maybe your question (+ an answer) would be there already.</div> > >><div><br> > >></div> > >><div><font face="Times New Roman" size="3"></font> Cheers,</div> > >><div><br> > >></div> > >><div> Boaz</div> > >><div><font face="Times New Roman" size="3"></font> </div> > >><div><font color="#000080" face="Times New Roman" size="3"><em>Boaz Shaanan, Ph.D. > >><br> > >>Dept. of Life Sciences <br> > >>Ben-Gurion University of the Negev <br> > >>Beer-Sheva 84105 <br> > >>Israel <br> > >> <br> > >>E-mail: [log in to unmask]<br> > >>Phone: 972-8-647-2220 Skype: boaz.shaanan <br> > >>Fax: 972-8-647-2992 or 972-8-646-1710 </em></font></div> > >><div><font color="#000080" face="Times New Roman" size="3"><em></em></font> </div> > >><div><font color="#000080" face="Times New Roman" size="3"><em></em></font> </div> > >><div><font face="Times New Roman" size="3"><em><font color="#000080"> > >><br> > >><br> > >></font></em></font></div> > >><font face="Times New Roman" size="3"></font></div> > >></div> > >><div style="font-family: Times New Roman; color: #000000; font-size: 16px"> > >><hr tabindex="-1"> > >><div id="divRpF112756" style="direction: ltr; "><font face="Tahoma" size="2" color="#000000"><b>From:</b> CCP4 bulletin board [[log in to unmask]] on behalf of Reginald McNulty [[log in to unmask]]<br> > >><b>Sent:</b> Tuesday, July 05, 2011 8:24 PM<br> > >><b>To:</b> [log in to unmask]<br> > >><b>Subject:</b> [ccp4bb] APBS<br> > >></font><br> > >></div> > >><div></div> > >><div> > >><div>Dear CCP4BB,</div> > >><div><br> > >></div> > >><div>I apologize for the off topic question.</div> > >><div><br> > >></div> > >><div>I have determined the 3D structure of a membrane protein transporter and want to make a figure showing the surface charge. So, I ran PDB2PQR and specified pH 5.4. I understand the next step is to run APBS. I know there are different dielectric constants > >> for parts of the protein exposed to membrane and cytosolic portions. I'm wondering if I need to take this into account when generating a figure for surface charge? If so, I'm wondering how do I tell the program residues that are embedded in the membrane > >> and those that are not?</div> > >><div><br> > >></div> > >><div>If you could help me answer these questions or point me in the right direction I'd greatly appreciate it.</div> > >><div><br> > >></div> > >><div>Best regards,</div> > >><div><br> > >></div> > >><div>Reggie McNulty</div> > >><div>Department of Molecular Biology and Biochemistry</div> > >><div>UC Irvine</div> > >><div><span class="Apple-style-span" style="color: rgb(0, 0, 255); "><br> > >></span><span class="Apple-style-span" style="color: rgb(0, 0, 255); "></span></div> > >><div><span class="Apple-style-span" style="color:rgb(0,0,255); font-family:'Times New Roman'; font-size:16px"> </span></div> > >><div><span class="Apple-style-span" style="border-collapse:separate; color:rgb(0,0,0); font-family:Helvetica; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:2; text-align:auto; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px; font-size:medium"><span class="Apple-style-span" style="border-collapse:separate; color:rgb(0,0,0); font-family:Helvetica; font-size:medium; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:2; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px"> > >><div style="word-wrap:break-word"> > >><div> > >><div style="margin-top:0in; margin-right:0in; margin-bottom:0.0001pt; margin-left:0in"> > >><font class="Apple-style-span" color="#0000FF" face="'Times New Roman'" size="4"><span class="Apple-style-span" style="font-size:16px"><br> > >></span></font></div> > >><div style="margin-top:0in; margin-right:0in; margin-bottom:0.0001pt; margin-left:0in"> > >><font class="Apple-style-span" color="#0000FF" face="'Times New Roman'" size="4"><span class="Apple-style-span" style="font-size:16px"><br> > >></span></font></div> > >><div style="margin-top:0in; margin-right:0in; margin-bottom:0.0001pt; margin-left:0in"> > >><font class="Apple-style-span" color="#0000FF" face="'Times New Roman'" size="4"><span class="Apple-style-span" style="font-size:16px"><br> > >></span></font></div> > >></div> > >></div> > >></span></span></div> > >><br> > >></div> > >></div> > >></div> > >></div> > >></body> > >></html> > >> > -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A