Hi all,<br>we typically use pdb_extract to generate pdb files with a good header.<br>There seems to be an issue with logfiles from refmac5.6.0117, distributed with the current ccp4 version, and pdb_extract.<br><br>pdb_extract version-3.006 is distributed with ccp4-6.2.0. While reading the refmac log file, pdb_extract chokes with a segmentation fault. When run without reading in the refmac log file, the program complains about the following missing link, both in the linux and osx distribution of ccp4.<br>
<br><span style="font-family: courier new,monospace;">Can not open file (/usr/local/ccp4/ccp4-6.2.0/ccp4-6.2.0//src/harvest_app_/pdb_extract/pdb-extract-data/mmcif_pdbx_2.items) in get_lines_from_file</span><br><br>pdb_extract version-3.010, as downloaded form the rcsb webpage also chokes on the refmac5 logfile with a segmentation fault.<br>
<br>Any ideas how to treat the new refmac log files in pdb_extract?<br><br>Thanks a lot.<br>Jan<br><br clear="all"><br>-- <br>Jan Abendroth<br>Emerald Biostructures<br>Seattle / Bainbridge Island, WA, USA<br>home: <a href="http://Jan.Abendroth_at_gmail.com">Jan.Abendroth_at_gmail.com</a><br>
work: JAbendroth_at_embios.com<br><a href="http://www.emeraldbiostructures.com">http://www.emeraldbiostructures.com</a><br><br>