Thanks for the input, that's really helpful to know!

-Joanna

On Thu, Jun 16, 2011 at 9:42 AM, Jeanette Mumford <[log in to unmask]> wrote:
Hi,

Even with 3 inputs you don't really have enough data to calculate a variance.  It is pretty much standard to use a fixed effects model for combining runs at the second level and then FLAME for the group analysis (3rd level).

Jeanette


On Thu, Jun 16, 2011 at 6:44 AM, Joanna Marie Chango <[log in to unmask]> wrote:
well we have three inputs (one cope for run one and two different copes from run two).  I don't know if that changes anything??  I'll have to check out the variance once I get into work later today.

-Joanna

On Thu, Jun 16, 2011 at 2:22 AM, Stephen Smith <[log in to unmask]> wrote:
You can't have a mixed-effects model of two inputs.  What is the variance!?
Steve.

On 16 Jun 2011, at 01:15, Joanna Marie Chango wrote:

Hi Stephen,

It is mixed effects.

-Joanna

On Wed, Jun 15, 2011 at 5:42 PM, Stephen Smith <[log in to unmask]> wrote:
Was this mixed effects or fixed effects?   

--------------------
Stephen M. Smith,  Professor of Biomedical Engineering
Associate Director,   Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington,
Oxford. OX3 9 DU, UK
+44 (0) 1865 222726  (fax 222717)
----------------------

On 15 Jun 2011, at 21:09, Joanna Marie Chango <[log in to unmask]> wrote:

Has anyone ever had trouble with level two analyses using only two runs?  When we run level two using a contrast of run1 and run 2, we are getting nothing (i.e., brain regions are blank when there should be activity there).  Any suggestions or insights would be appreciated!

Thanks,
Joanna

--
Joanna M. Chango, M.A.
Graduate Student, Clinical Psychology
University of Virginia
P.O. Box 400400
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--
Joanna M. Chango, M.A.
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University of Virginia
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Charlottesville, VA 22904-4400
(434) 982-5583
http://people.virginia.edu/~psykliff/Teenresearch/Joanna.html


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FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK---------------------------------------------------------------------------






--
Joanna M. Chango, M.A.
Graduate Student, Clinical Psychology
University of Virginia
P.O. Box 400400
Charlottesville, VA 22904-4400
(434) 982-5583
http://people.virginia.edu/~psykliff/Teenresearch/Joanna.html


Confidentiality Notice:  This e-mail communication and any
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communication in error, please notify me immediately by
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--
Joanna M. Chango, M.A.
Graduate Student, Clinical Psychology
University of Virginia
P.O. Box 400400
Charlottesville, VA 22904-4400
(434) 982-5583
http://people.virginia.edu/~psykliff/Teenresearch/Joanna.html


Confidentiality Notice:  This e-mail communication and any
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