¡¡¡¡Haoran.
ÔÚ 2011-05-16 19:04:19£¬"Vladimir Litvak" <
[log in to unmask]> дµÀ£º
>Dear Haoran,
>
>
>
>On 16 May 2011, at 10:13, "·ÉÄñ" <
[log in to unmask]> wrote:
>
>> Dear Vladimir,
>> ¡¡¡¡Your guess was right. I really couldn't do 3D sources reconstruction of that data by GUI. It reminded me ''checkmeeg: data scale missing, assigning default
>> checkmeeg: no fiducials are defined''. Then I did preprocess steps again, and found that I couldn't obtain the fiducials automatically(when I finished Converting step). I checked the other datasets, luckily, they didn't have this problem. I guess there must be some wrongs of my original dataset (only that one), right ?
>
>right
>
>> ¡¡¡¡As for reconstruction batch problem, with the latest version of spm8(4029) and normal dataset, I can do reconstruction by that saved "renconstruction_batch" successfully. Thus, the problems related to reconstruction batch that I confronted previously may result from the different versions of spm8.
>> By the way, in ''MEEG head model specification> EEG head modle'' module, must I specify the ''EEG head modle'' if I just process MEG dataset?
>
>One peculiarity of batch is that when you build the configuration you
>can't use information from the dataset which only becomes available
>when you run the batch. In particular you can't know if the dataset in
>question is EEG or MEG. So don't worry about the EEG head model. If
>your dataset is MEG it will be ignored.
>
>Best,
>
>Vladimir
>
>
>> ¡¡¡¡Thank you very much for helping me solve these tiny problems!
>>
>> ¡¡¡¡Haoran.
>>
>>
>> At 2011-05-16 06:38:23£¬"Vladimir Litvak" <
[log in to unmask]> wrote:
>>
>> >Dear Haoran,
>> >
>> >The problem seems to be not in the batch but in your MEG data (or was
>> >it EEG?). There are no valid fiducials in that dataset. Could you
>> >perform source reconstruction using the GUI? I'd be surprised if you
>> >could. So we need to focus on how to get fiducials into your dataset
>> >and for that you need to tell me more about where that data comes
>> >from.
>> >
>> >Best,
>> >
>> >Vladimir
>> >
>> >2011/5/15 ·ÉÄñ <
[log in to unmask]>:
>> >> Dear Vladimir,
>> >> ¡¡¡¡I tried again with the latest version of spm8(4029), the previous problem(
>> >> template=1) disappeared. But this time, I confronted a new problem. It
>> >> reminded me "No executable modules, but still unresolved dependencies or
>> >> incomplete module inputs." But I don't know where the problems are. Could
>> >> you help me see my reconstruction_batch.mat and give me some advice ? Thanks
>> >> a lot.
>> >>
>> >> Haoran.
>> >>
>> >> These code appears in the matlab command window when I ran the batch:
>> >> SPM8: spm_eeg_inv_mesh_ui (v4027) 11:09:13 - 15/05/2011
>> >> ========================================================================
>> >> template: 0
>> >> sMRI: 'D:\Processed\DP01\sKEYAN-0002-00000-000001-01.img,1'
>> >> def: 'D:\Processed\DP01\y_sKEYAN-0002-00000-000001-01.nii'
>> >> Affine: [4x4 double]
>> >> Msize: 2
>> >> tess_mni: [1x1 struct]
>> >> tess_ctx:
>> >> 'D:\Processed\DP01\sKEYAN-0002-00000-000001-01cortex_8196.surf.gii'
>> >> tess_scalp:
>> >> 'D:\Processed\DP01\sKEYAN-0002-00000-000001-01scalp_2562.surf.gii'
>> >> tess_oskull:
>> >> 'D:\Processed\DP01\sKEYAN-0002-00000-000001-01oskull_2562.surf.gii'
>> >> tess_iskull:
>> >> 'D:\Processed\DP01\sKEYAN-0002-00000-000001-01iskull_2562.surf.gii'
>> >> fid: [1x1 struct]
>> >> Failed 'M/EEG head model specification'
>> >> Reference to non-existent field 'fid'.
>> >> In file "C:\Program Files\MATLAB\spm8new\config\spm_cfg_eeg_inv_headmodel.m"
>> >> (v4118), function "specify_headmodel" at line 209.
>> >> No executable modules, but still unresolved dependencies or incomplete
>> >> module inputs.
>> >> The following modules did not run:
>> >> Failed: M/EEG head model specification
>> >> Skipped: M/EEG source inversion
>> >> Skipped: M/EEG inversion results
>> >>
>> >>
>> >> At 2011-05-13 22:06:06£¬"Vladimir Litvak" <
[log in to unmask]>> >>> wrote:
>> >>
>> >>>Dear Haoran,
>> >>>
>> >>>I tried and everything works fine for me. Make sure your SPM version
>> >>>is up to date and if you can't make it work, send me your saved batch
>> >>>and I'll take another look.
>> >>>
>> >>>Best,
>> >>>
>> >>>Vladimir
>> >>>
>> >>>2011/5/10 ·ÉÄñ <
[log in to unmask]>:
>> >>>> Dear SPM's users,
>> >>>> ¡¡¡¡Have you ever used batch interface to do 3D source reconstruction for
>> >>>> EEG/MEG data? I choosed three separate modules "M/EEG head model
>> >>>> specification" "M/EEG source inversion" and "M/EEG inversion results" so as
>> >>>> to reconstruct the sources. In the "M/EEG head model specification" module,
>> >>>> I specified ''Meshes<Meshes source<individual structual image'' and then
>> >>>> selected a mri file named "sDP74-0003-00000-000001-01.img,1". When all was
>> >>>> ready and then I ran the batch, however, I found that it din't excuted the
>> >>>> specified structual image ( as you can see below 'template=1') and the
>> >>>> matlab command window appeared those:
>> >>>>
>> >>>> SPM8: spm_eeg_inv_mesh_ui (v3731) 21:39:06 - 09/05/2011
>> >>>> ========================================================================
>> >>>> template: 1
>> >>>> Affine: [4x4 double]
>> >>>> sMRI: 'C:\Program
>> >>>> Files\MATLAB\toolbox\spm8\canonical\single_subj_T1.nii'
>> >>>> Msize: 2
>> >>>> tess_mni: [1x1 struct]
>> >>>> tess_ctx: 'C:\Program
>> >>>> Files\MATLAB\toolbox\spm8\canonical\cortex_8196.surf.gii'
>> >>>> tess_scalp: 'C:\Program
>> >>>> Files\MATLAB\toolbox\spm8\canonical\scalp_2562.surf.gii'
>> >>>> tess_oskull: 'C:\Program
>> >>>> Files\MATLAB\toolbox\spm8\canonical\oskull_2562.surf.gii'
>> >>>> tess_iskull: 'C:\Program
>> >>>> Files\MATLAB\toolbox\spm8\canonical\iskull_2562.surf.gii'
>> >>>> fid: [1x1 struct]
>> >>>>
>> >>>> ¡¡I didn't understand why. Anyone who knows the reason ? Thanks very much
>> >>>> for any help !
>> >>>>
>> >>>> --
>> >>>> Haoran LI (MS)
>> >>>> Brain Imaging Lab,
>> >>>> Research Center for Learning Science,
>> >>>> Southeast University
>> >>>> 2 Si Pai Lou , Nanjing, 210096, P.R.China
>> >>>>
>> >>>>
>> >>
>> >>
>> >>
>> >>
>> >>
>>
>>