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Hi The easiest is indeed to run melodic from the command line and to use the fsl_sub mechanism to do so: fsl_sub -q long.q melodic -i data <bladiblah> hth Christian On 8 May 2011, at 13:00, Ted Satterthwaite wrote: > Dear FSL experts, > > Following up on this thread: is the SGE functionality of MELODIC only available through the GUI? The reason I inquire is that I have already run FNIRT on a large sample of subjects, and do not wish to re-run the registrations; however, the registration step appears to be obligate using the MELODIC GUI. I can of course easily run MELODIC from the command line and avoid re-running the registrations, but then MELODIC does not self-submit to the grid. Is there a way to achieve both?: i.e., a) run melodic without re-running registrations, but b) also utilize SGE? > > Thanks for any advice you can offer. > > Cheers, > Ted > > > ______ > Ted Satterthwaite, M.D. > University of Pennsylvania School of Medicine