Dear Dr. Jenkinson:
I ever checked the slicerdir directory of the registraion output data.
It seemed that the registration was fine.
The attached is the compressed file of the log file.
Please take look at these files and see if there any suggestions to debug this problem.
Sorry to cause your inconvenience and thank you for your kind help.
Dr. Lai
--- 11/5/22 (日)，Mark Jenkinson <[log in to unmask]> 寫道：
寄件者: Mark Jenkinson <[log in to unmask]>
主旨: Re: [FSL] FW： Re: [FSL] questions about FIRST segmentation faults
收件者: [log in to unmask]
日期: 2011年5月22日,日,上午4:47
Dear Dr Lai,
I need to see the content of these slides, although it looks
like the registration has failed if there is a first_flirt error file.
Have you checked the registration outputs, as recommended
in the web page documentation?
All the best,
Mark
On 21 May 2011, at 02:58, Chien-Han Lai wrote:
> The e files are as follows
>
> clean_up.e15313.1
> first_flirt.e8698
> first_post.e15298.1
> first.e8915
>
> Thank you.
>
> Dr. Lai
>
> --- 11/5/21 (六)，[log in to unmask] <[log in to unmask]> 寫道：
>
> 寄件者: [log in to unmask] <[log in to unmask]>
> 主旨: Re: [FSL] questions about FIRST segmentation faults
> 收件者: "FSL - FMRIB's Software Library" <[log in to unmask]>
> 日期: 2011年5月21日,六,上午9:23
>
> Dear Dr. Jenkinson:
>
> Thank you for your kind reply.
>
> The attached is the log file and it seems with some .*e* files.
>
> Besides, below is our 3T MRI pulse sequence for structural imaging
>
> (TR 2530ms； TE 3.03ms；slice thickness= 1mm（no gap）；192slices；matrix = 224x256；field of view: 256mm；number of excitation=1)
>
> I don't know if the FOV too short for the cover of brainstem.
>
> As you suggested, how should I set the list except brainstem?
>
> Thank you for your kind help.
>
> Sincerely yours
>
> Dr. Lai
>
> --- 11/5/20 (五)，Mark Jenkinson <[log in to unmask]> 寫道：
>
> 寄件者: Mark Jenkinson <[log in to unmask]>
> 主旨: Re: [FSL] questions about FIRST segmentation faults
> 收件者: [log in to unmask]
> 日期: 2011年5月20日,五,下午6:55
>
> Dear Dr Lai,
>
> Can you look at the log files and tell us if there were any errors
> reported (the *.e* files - see the FIRST documentation page at
> http://www.fmrib.ox.ac.uk/fsl/first/index.html
> under General Advice and Workflow).
>
> We need to know more details in order to be able to help.
> One problem which might cause this is if the FOV of the image
> is a bit short in the inferior direction so that it does not cover
> all the brainstem. If this is the case then try using run_first_all
> with a list of structures that excludes the brainstem.
>
> All the best,
> Mark
>
>
> On 20 May 2011, at 11:32, Chien-Han Lai wrote:
>
> > Dear all FSL experts:
> >
> > I probably have a technique issue for the FIRST segmentation faults.
> >
> > I ever run the FIRST well on my previous MDI data and the mesh file is fine without segmentation faults.
> >
> > However, I tried FIRST on another set of MRI data, I found I couln't view the mesh (.vtk) file in the fslview as I saw before in the previous set of data.
> >
> > Besides, there was no any subcortical structural data could be shown in the FSLVIEW after FIRST segmentation (mesh file, the volume file after conversion from mesh file) and
> >
> > The wrong message was as follows " 16935 Segmentation fault ${FSLDIR}/bin/fslview.app/Contents/MacOS/fslview $@".
> >
> > I don't understand why the FIRST can't work in another set of data.
> >
> > Can anybody help me and give me some suggestions?
> >
> > Thank you.
> >
> > Dr. Lai
