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Hi Eric, On Wed, 4 May 2011, jlliu liu wrote: >Hi All, > >I have two questions for Pymol. the pymol wiki is your friend (http://www.pymolwiki.org/index.php/Main_Page) as is the pymol users mailing list (http://sourceforge.net/mail/?group_id=4546). Follow the link to subscribe. > >1. Can you write out the PDB file after structural alignment? yes you can (http://www.pymolwiki.org/index.php/Save) >2. How to only show structure that is several angstrom from the ligand? use the selection algebra rules (http://www.pymolwiki.org/index.php/Selection_Algebra) happy pymoling, Eric > >Thanks a lot in advance! > >Eric > > ================================ Eric T. Larson, PhD Biomolecular Structure Center Department of Biochemistry Box 357742 University of Washington Seattle, WA 98195 email: [log in to unmask] ================================