> Dear FSL experts,
>
> I posted the following message a while ago but haven't received any response yet. I am kind of stuck and not able to go forward.I will appreciate if somebody can help me through?
>
> Thanks in Advance!
> /Kami
>
> --- On Fri, 4/15/11, kambiz rakhshan <
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>
>
> I have tried to apply tbss_non_FA to my MD images (N= 287 subjects to normalize to the most typical subject in the study) and I carefully followed the steps given in TBSS manual, however, there seems to be too many files that causes the program to crash. I have also tried to change the tbss_non_FA as it was recommended
:
>
> ${FSLDIR}/bin/fslmerge -t ../stats/all_$ALTIM `$FSLDIR/bin/imglob *_to_target_${ALTIM}.*`
>
> in $FSLDIR/bin/tbss_non_FA
>
> to read:
>
> ${FSLDIR}/bin/fslmerge -t ../stats/all_$ALTIM `$FSLDIR/bin/imglob *_to_target_${ALTIM}.nii.gz`
>
> I did this simply by changing a line in gedit program using a diplay function by right-clicking on tbss_non_FA but the error still persists (SEE BELLOW)!
>
> What can I do to get ride of this error or perhaps I didn't change the noted line appropriately?
>
> I will greatly appreciate if somebody help me !
> Kami
>
>
>
> using pre-chosen registration target: target
> upsampling alternative images into standard space
> /usr/share/fsl/4.1/bin/tbss_non_FA: 95: /usr/share/fsl/4.1/bin/imglob: Argument list too long
> merging all upsampled MD images into
single 4D image
>
> Usage: fslmerge <-x/y/z/t/a> <output> <file1 file2 .......>
> -t : concatenate images in time
> -x : concatenate images in the x direction
> -y : concatenate images in the y direction
> -z : concatenate images in the z direction
> -a : auto-choose: single slices -> volume, volumes -> 4D (time series)
> ** ERROR (nifti_image_read): failed to find header file for 'all_MD'
> ** ERROR: nifti_image_open(all_MD): bad header info
>
