Hi FSLers,

As a continuation of this topic, can someone suggest how I can use as seed/termination/waypoint mask a functional output from an SPM2 analysis (I have the SPM.mat files from patient>control and control>patient contrasts from 2nd level analyses) within FSL to constrain the probtrackx and tbss outputs? I believe SPM and FSL are compatible. Or am I completely off target?

Thanks in advance for any help,

Shantanu

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Shantanu Ghosh, PhD

Assistant Professor

Department of Humanities and Social Sciences

Indian Institute of Technology Delhi

Hauz Khas

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INDIA

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From: Stamatios Sotiropoulos <[log in to unmask]>
To: [log in to unmask]
Sent: Thu, 14 April, 2011 9:53:21 PM
Subject: Re: [FSL] ProbrackX Termination Mask

Hi,

there many atlases in FSL that you could extract regions from, including the Talairach Daemon labels. This has been discussed extensively before in the list, see for example:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1102&L=FSL&P=R50139&1=FSL&9=A&I=-3&J=on&d=No+Match%3BMatch%3BMatches&z=4

Cheers,
Stam

On 14 Apr 2011, at 16:53, R. Duke wrote:

> Hello Experts,
>
> I wanted to define my termination masks based on function and was wondering if I could use the Talairach Daemon atlas create some of my target regions?
>
> Cheers!
>