Dear ALL:
Hello. I write to ask you for help about FSL_VBM protocol. I am
processing T1 images of two groups:patient and control. According to the
classical method in the manual you write on the FSL mainpage,
"the registered partial volume images were then modulated (to
correct for local expansion or contraction) by dividing by the Jacobian
of the warp field. The modulated segmentated images were then
smoothed."
Then I am going to do statistical analysis.Here come my
questions:
1. As the method description, the gray matter "volume" or the
gray matter "density" are going to be compared between these two groups?
What is the different between "gray matter volume" and "gray matter
denstiy"?
The following papers are done by the same method, the first paper
call it "denstiy" but the second one call it "volume". I am
confused.
2008-Neuron-The Brain in Chronic CRPS Pain: Abnormal Gray-White
Matter Interactions in Emotional and Autonomic Regions
2010-BP-Gray Matter Alterations in Adults with
Attention-Deficit/Hyperactivity Disorder Identified by Voxel Based
Morphometry
2. What is the purpose of Jacobian modulation? In my
opinion:modulated refers to volume; unmodulated refers to denstiy,
right?
3.If the patient group and the controls showed dofferent SDS,
how can I include the SDS as a covariate using ANCOVA? What is the
command in Randomise?
For instance:randomise -i GM_mod_merg_s3 -m GM_mask -o fslvbm -d
design.mat -t design.con -T -n 5000 -V
4.With regarding to the Multiple comparison issues, the TFCE
corrected survied nothing, However, the
uncorrected result displayed some brain regions. Is it common?
What is the meaning of the uncorrected results and the significant
between the corrected and uncorrected result?
Thank you very much.
Best
wish
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Gwenaëlle
Douaud, PhD
FMRIB Centre, University of Oxford
John Radcliffe
Hospital, Headington OX3 9DU Oxford UK
Tel: +44 (0) 1865 222 523
Fax: +44 (0) 1865 222
717
www.fmrib.ox.ac.uk/~douaud
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