Hi Micah -
Sure, you should be able to use:fslmerge
with the -t flag
to create a 4-D file of your (registered) images
e.g. fslmerge -t output.nii.gz Subject*/rT1.nii.gz
and
fslmaths
with the -Tmean flag
to get a mean image.
e.g. fslmaths output.nii.gz -Tmean mean.nii.gz
Just type the commands on their own to get their usage.
Eugene
On 29 March 2011 15:58, Micah Johnson
<[log in to unmask]> wrote:
I would like to create a group mean image of either their b0's or T1's. I've already created a mean FA image using FSL's tbss scripts. I've tried to make these tbss scripts compatible for b0 or T1, with no luck since I don't know Linux very well. Are there any other pre-made FSL scripts for creating group mean images?
