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Hello, The update from 2.2.0 to 2.2.1 is best not done from the Update menu but instead going to the download page and getting 2.2.1 directly from that: http://www.ccpn.ac.uk/ccpn/software/downloads-v2 Wayne On Tue, 15 Mar 2011, Rasmus Fogh wrote: > Dear Peg, > > OK, there is a bug in the code you have. Since it is no longer in the code in > our repositories, it is possible that it has already been fixed. Try updating > your release: > > - Open Analysis > - Make a note of the CcpNmr Anlaysis Version and Release (third line) > and the time the distributionwas created (fourth line) in case this does > not work. > - Go into M:Project:Updates > - If there are any uninstalled patches, press [Select All], and then > [Install Selected]. This should install all current patches (assuming > you have write permission to the place where the Analysis release > lives). - If this does not an error message, then try again if the program > now works. > > Please let us know whether it works or not. > > Yours, > > Rasmus > > --------------------------------------------------------------------------- > Dr. Rasmus H. Fogh Email: [log in to unmask] > Dept. of Biochemistry, University of Cambridge, > 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002 > > On Tue, 15 Mar 2011, Peg Nyon wrote: > >> Dear Rasmus, >> >> Thank you for your quick response. >> >> This is the output from the command line: >> >> Model read finished. Duration 1.37403202057 >> Model validity check skipped >> CcpNmr Analysis Version 2.2. Release 0 (Copyright 2003-2010 CCPN) >> Distribution created Mon Oct 4 14:03:29 2010 >> >> If you use CcpNmr Analysis, please quote the following reference: >> >> Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne >> Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides >> and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy: >> Development of a Software Pipeline. Proteins 59, 687 - 696. >> >> A copy of the in-program documentation is located at: >> http://www.ccpn.ac.uk/documentation >> >> For how-tos and FAQs visit the CCPN wiki site at: >> http://www.ccpn.ac.uk/wiki >> >> To report bugs use the bug tracker at: >> http://www.ccpn.ac.uk/bugs >> >> For help and support join the mailing list at: >> http://www.ccpn.ac.uk/support >> >> For Python API documentation, tutorials and CCPN web applications visit: >> http://www.ccpn.ac.uk/ >> >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 103]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/293K_K154N/summed_all3.spc >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 75]> with path >> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/4.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 92]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/30.fid/30.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 59]> with path /d/bg1/u/ubcg68c/topspin/k154n/34/34.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 79]> with path >> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/28.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 107]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/288K_WT/WT_288K_summed_all4.spc >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 66]> with path >> /d/bg1/u/ubcg68c/topspin/k154n/25_wt/25_wt.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 102]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/288K_K154N/summed_all4.spc >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 77]> with path >> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/13.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 108]> with path >> /d/bg1/u/ubcg68c/topspin/ttai_011110/summed_last2/summed_eq_5.spc >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 89]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/9.fid/9_98.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 93]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/32.fid/32.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 91]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/11.fid/11_98.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 90]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/9.fid/9_100.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 58]> with path >> /d/bg1/u/ubcg68c/topspin/k154n/1003/1003.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 76]> with path >> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/6.ucsf >> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix >> ['backb_assign', 106]> with path >> /d/bg1/u/ubcg68c/topspin/K154N_280910/293K_WT/WT_293K_summed_all3.spc >> Traceback (most recent call last): >> File >> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisGui.py", line >> 226, in <module> >> main(projectDir, max_size, glDirect) >> File >> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisGui.py", line >> 111, in main >> top.initProject(project) >> File >> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisPopup.py", >> line 1544, in initProject >> Analysis.initProject(self, project) >> File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py", >> line 291, in initProject >> self.initSpectra() >> File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py", >> line 1066, in initSpectra >> self.initExperiment(experiment) >> File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py", >> line 1029, in initExperiment >> ExperimentBasic.initExpTransfers(experiment, overwrite=False) >> File >> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/ExperimentBasic.py", >> line 450, in initExpTransfers >> for expGraph in experiment.refExperiment.nmrExpProtoType.expGraphs: >> AttributeError: 'RefExperiment' object has no attribute 'nmrExpProtoType' >> >> Best wishes, >> Peg >> >> >> On 15/03/2011 14:46, Rasmus Fogh wrote: >> Dear Peg, >> >> I am afraid we need a little more information here. >> >> Recently we prefer people to send their error messages via >> the automatic bug reporting system. That will automatically >> gather most of the information we need, and fit nicely into >> our procedures. >> >> If you prefer sending a mail direct, you should join >> [log in to unmask] and send it there - that is the project >> discussion group, where other users can also help. ccpn-dev >> is intended for discussion among developers on future program >> developments. >> >> Anyway, when you get an error message an click the suitable >> OK buttons, you will get an error output to the command line. >> For a direct mail you should copy what is on the command line >> and put it in your mail. Copy all the way back till you are >> sure that the output reflects correct working of the program >> - sometimes there is important information before the final >> error trace, or there may be previous errors that were the >> real cause of the problem. If in doubt just copy the entire >> command window - electrons are cheap. >> >> As for your actual problem, it looks like there may be a bug >> in a recent program change. If you send me the error trace, >> and tell me what you were doing when you got it, I can zero >> in on the line with the problem and hopefully come up with a >> fix quickly. >> >> Yours, >> >> Rasmus >> >> --------------------------------------------------------------------------- >> Dr. Rasmus H. Fogh Email: >> [log in to unmask] >> Dept. of Biochemistry, University of Cambridge, >> 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX >> (01223)766002 >> >> On Tue, 15 Mar 2011, Peg Nyon wrote: >> >> Hi there, >> >> My name is Peg, postdoc from Birkbeck College, >> Lonon. I'm currently using CcpNmr Analysis >> version 2.2.0. I have a problem to open my >> project. An error message appears: Project >> invalid, please quit, fix and re-start: >> AttributeError: 'RefExperiment' object has no >> attribute 'nmrExpProtoType'. >> >> What can i do to fix the error of the project? >> >> I have a back-up of my project >> >> Best wishes, >> Peg >> >> >> >