Try the program Hollow. Or visit USF and find the cavity script. There's also Carver out there but I never got it really to work for my purposes, but it's been written for channels.
Jürgen
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Jürgen Bosch
Johns Hopkins Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Phone: +1-410-614-4742
Lab: +1-410-614-4894
Fax: +1-410-955-3655
Hello all,
Does anyone know how to get values for pore sizes of membrane channels? I’m not interested in A x B angstrom values measured between atom centers and assuming a regular pore shape, but a “real-life” value of either surface area at the narrowest point or the volume of a block centered on the narrowest point of the pore.
Thanks, Bert
