>
> They're both getting Python "magic number" errors, which from what I know result from one Python version trying to run a .pyc file created with another Python version, but I'm not sure exactly how to work around it in the context of the stand-alone package. The students aren't planning to do much in the structural realm outside the course, and I don't want to have to go through installing Xcode and Fink to compile on their own, since they probably won't need it much past this one assignment.
>
Usually python will regenerate pyc files as needed (assuming the source
files are available). So "find $COOTDIR -name "*.pyc" -exec rm {} \;"
might be worth a try.
Pete
> Any suggestions would be greatly appreciated. Thanks!
>
> Jared Sampson
>
>
>
> First student (3 week-old Macbook Pro, 10.6.6, stand-alone package for Version 0.6.2-pre-1-3250)
> ====================
> $ coot
> Acquiring application resources from /Library/Coot/share/coot/cootrc
> INFO:: splash_screen_pixmap_dir /Library/Coot/share/coot/pixmaps
> INFO:: Colours file: /Library/Coot/share/coot/colours.def loaded
> There are 118 data in /Library/Coot/share/coot/lib/data/monomers/list/mon_lib_list.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ALA.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASP.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASN.cif
> [... and a bunch more monomers ...]
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/u/UR.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif
> There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif
> sbase monomer dir: /share/sbase
> sbase files not found in /share/sbase
> Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb
> PDB file /Library/Coot/share/coot/standard-residues.pdb has been read.
> Spacegroup: P 1
> Cell: 40.631 109.18 93.243 90 90 90
> initalize graphics molecules...done.
> (filter-fileselection-filenames-state)
> (get-active-map-drag-flag)
> ImportError: Bad magic number in /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site.pyc
> ====================
>
>
> second student (Macbook, 10.6.5, also Version 0.6.2-pre-1-3250)
> ====================
> $ /usr/local/bin/coot
> Acquiring application resources from /Library/Coot/share/coot/cootrc
> INFO:: splash_screen_pixmap_dir /Library/Coot/share/coot/pixmaps
> INFO:: Colours file: /Library/Coot/share/coot/colours.def loaded
> There are 118 data in /Library/Coot/share/coot/lib/data/monomers/list/mon_lib_list.cif/
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ALA.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASP.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/ASN.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CYS.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLN.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLY.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GLU.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/p/PHE.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HIS.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/i/ILE.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/l/LYS.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/l/LEU.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/m/MET.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/e/ETH.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CIT.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/AR.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/a/AD.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CR.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/c/CD.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GR.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/g/GD.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/t/TD.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/u/UR.cif
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif
> There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif
> sbase monomer dir: /share/sbase
> sbase files not found in /share/sbase
> Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb
> PDB file /Library/Coot/share/coot/standard-residues.pdb has been read.
> Spacegroup: P 1
> Cell: 40.631 109.18 93.243 90 90 90
> initalize graphics molecules...done.
> (filter-fileselection-filenames-state)
> (get-active-map-drag-flag)
> ImportError: Bad magic number in /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site.pyc
> ====================
>
>
>
>
> --
> Jared Sampson
> Xiangpeng Kong Lab
> NYU Langone Medical Center
> New York, NY 10016
> 212-263-7898
>
>
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