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Hello Edward, I am not really certain for my explanation, but your error message about the namelist could be provoked by a problem in your input files. In fact you have to oriented each strand and define limits of the two strands. If you do a mistake with the orientation you can have this type of message. You can try different combination with this part of your command line : 2 1 -1 0 0 1: 12 24:13 Maybe the key could be in this part of your command line atless for the input error message. To my mind you have to edit your input file because its format is not adaptated for this programm. The format wich is too recent or with to much informations are not well suported. I hope i help you. Sincerly . Nicolas Le 03/02/11 21:05, Eddie Pryor a écrit : > Hi, All, > > I am trying to analyze DNA from a recent structure with the program > Curves+ (R. Lavery et al, Nuc. Acids. Res (2009) 37:17 5917; > http://gbio-pbil.ibcp.fr/Curves_plus/Curves+.html). I have downloaded > the files, and untarred them to a directory "curves" on my machine. > Running the Make command on these files yielded no errors, and I have > the executable file Cur+ in this directory. I am trying to run this > program, first using the example data that is provided (the > Drew-Dickerson Dodecamer), but am having some difficulties. The > resource for Curves gives the following command to run the program: > > /Users/RL/Code/Cur+ <<! > &inp file=str/1bna, lis=r+bdna, > lib=/Users/RL/Code/standard, > &end > 2 1 -1 0 0 > 1: 12 > 24:13 > ! > > On my machine, the directory structure is slightly different: > - the executable Cur+ is in a folder named "curves" > - the files standard_b.lib and standard_s.lib are also in this folder > - the pdb file 1bna.pdb is in the subfolder "data" > > I have tried to run the program by doing the following: > > [xxxxx@zeus ~/curves]$ Cur+ <<! > ? &inp file=data/1bna, lis=r+bdna, > ? lib=standard, &end > ? 2 1 -1 0 0 > ? 1:12 > ? 24:13 > ? ! > > The question mark prompts appear upon hitting enter after each line. > > The only error message I get when I try to run this is: > > ---- Error in namelist input for ---- > > > I have even tried the following (entering all if the input files on > the same line): > > [xxxxx@zeus ~/curves]$ Cur+ <<! &inp file=data/1bna, lis=r+bdna, > lib=standard, &end > ? 2 1 -1 0 0 > ? 1:12 > ? 24:13 > ? ! > > Which gives the following errors: > inp: Command not found > end: Not in while/foreach > At line 28 of file nml.f > Fortran runtime error: End of file > > I am hoping that some of you have had success with running this > program and can offer any advice. I would really appreciate it! > > Thanks! > > Edward Pryor > Ph.D. Candidate > Tom Hollis Lab > Department of Biochemistry > Center for Structural Biology > Wake Forest University School of Medicine > > > > > -- > This message has been scanned for viruses and > dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is > believed to be clean. -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.