Donald,
The problem is that my "batch.m," as you call it, is just an SPM8 _batch engine_ batch script. That is, it just defines a bunch of "matlabbatch" stuff. Running it within matlab doesn't do anything; it has to be "loaded" and "run" by the SPM8 batch engine. That's the part I'm uncertain how to instantiate in matlab code.
In other words, it's not batch code I wrote myself (calling functions spm_*.m); rather, it's "SPM8 batch engine" batch code.
Best,
S
Stephen J. Fromm, PhD
Contractor, NIMH/MAP
(301) 451--9265
________________________________________
From: MCLAREN, Donald [[log in to unmask]]
Sent: Thursday, January 13, 2011 9:16 AM
To: Fromm, Stephen (NIH/NIMH) [C]
Cc: [log in to unmask]
Subject: Re: [SPM] Batching the SPM8 batch engine?
subjects={}
Currpath=pwd;
for ii=1:length(subjects)
cd([currpath filesep subjects{ii}]);
Batch.m
End
You don't need to load the m file. You can run Ur straight from the
command line.
On Thursday, January 13, 2011, Stephen J. Fromm <[log in to unmask]> wrote:
> I want to do the following (pseudocode):
>
> loop over subjects s {
> cd into directory of s
> load *.m batch script
> run batch script
> }
>
> Is there a way to write a small wrapper script like that?
>
> Or is there a way to "concatenate" the batch scripts for each subject within the matlabbatch "language" itself, with "run" commands in between?
>
> TIA,
>
> S
>
--
Best Regards, Donald McLaren
=================
D.G. McLaren, Ph.D.
Postdoctoral Research Fellow, GRECC, Bedford VA
Research Fellow, Department of Neurology, Massachusetts General Hospital and
Harvard Medical School
Office: (773) 406-2464
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