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I am attempting probtrack in a mac 10.5.6 – running fsl with X11 in tcsh shell.
After many hours of processing, the bedpostx terminates with the following message
Queuing post processing stage
52 slices processed
For some reason the bedpostX process DOES NOT appear
to have successfully completed. Please examine your
results carefully.
/Users/Lena/fsl/bin/bedpostx: line 250: kill: (38592) - No such process
Any help will be greatly appreciated.
Lena
On 18/01/2011 19:52, "Mark Jenkinson" <[log in to unmask]">[log in to unmask]> wrote:
Hi,
It does correct for head motion (rotation and translation), as it says on the webpage:
Eddy Current Correction corrects for these distortions, and for simple head motion, using affine registration to a reference volume.
All the best,
Mark
On 18 Jan 2011, at 18:54, Roger Jou wrote:
> Hello everyone,
>
> I understand that eddy_correct does not correct for head rotation. I was wondering if there was a standard protocol using FSL tools to correct for rotational head movement. If not, how is the issue of head rotation usualy addressed in DTI studies?
>
> Many thanks,
>
> Roger
>
_______________________________________________________
Lena Palaniyappan
Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham)
South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
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