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On Tue, Jan 25, 2011 at 07:59:05AM +0000, Riccardo Navarra wrote: > I think SGE changed. > > The gridengine package in Ubuntu 10.10 repository installs Grid Engine > 6.2u4 (mainly in /usr/lib/gridengine/, /usr/share/gridengine/ . > "About" tab in qmon GUI reports: "Grid Engine is based on code donated > by Sun Microsystems..." > > In this environment, there are no "SGE_ROOT" nor > "/usr/local/share/sge/default/common/setting.sh" (nor any "sge" > directory, of course) that fsl_sub look for to set-up parallelization > in FSL. The Debian package of FSL works fine with the Debian package of SGE, even if no SGE_ROOT is set and no setting.sh is available. The 'fsl' manpage has more information. Essentially, you only have to set FSLPARALLEL=1 to enable submission to SGE within FSL. Michael -- Michael Hanke http://mih.voxindeserto.de