On Mon, Nov 29, 2010 at 6:47 PM, MP <
[log in to unmask]> wrote:
> Hi Vladimir,
> Many thanks for your help. Could you please guide how can I pre-compute the
> head model for my dataset using SPM batch tool? I want to do this so that I
> can include the eye-blink correction using Berg algorithm in a script.
> Thanks,
> - Muhammad
>
> On Sat, Nov 13, 2010 at 7:48 AM, Vladimir Litvak <
[log in to unmask]>
> wrote:
>>
>> Dear Muhammad,
>>
>> On Sat, Nov 13, 2010 at 3:46 AM, MP <
[log in to unmask]> wrote:
>> > Hello all,
>> > I am doing eye-blink correction through Berg algorithm. I have a couple
>> > of
>> > questions in this regard:
>> > 1. Once the data has been run through the Berg algorithm, is the output
>> > data
>> > corrected for the eye-blinks, or is there anything that needs to be
>> > done?
>>
>> If you've done everything correctly the data is corrected. If it's
>> continuous data you could average it around eyeblinks again to make
>> sure they are gone.
>>
>> > 2. While running the Berg algorithm, a prompt comes up asking "Which
>> > Head
>> > Model?" for the MEEG/MRI coregistration. Which script is this prompt
>> > coming
>> > from?
>>
>> Head model is necessary for the 'Berg' option (but not for SSP)
>> because Berg algorithm uses lead fields of cortical sources. If you
>> want to batch it you can pre-compute the head model for your dataset
>> using the batch tool before correcting it.
>>
>> > 3. How does the Berg algorithm affect the spectral information in the
>> > data?
>> > Is it OK to do TF-decomposition and then stat analysis on this data?
>>
>> In principle it is OK, but it depends on the question and the data so
>> you should still be careful. The principles of this correction are
>> very similar to those of ICA and ICA is very frequently used for
>> removing eye blinks prior to all kinds of analyses so you can use the
>> ICA literature as a precedent. In any case perhaps you should repeat
>> your analysis with and without eye blink correction and convince
>> yourself that the differences you see can be attributed to eye blink
>> removal.
>>
>> Best,
>>
>> Vladimir
>>
>>
>> > Thanks
>> > - Muhammad
>> >
>> >
>> > On Fri, Nov 12, 2010 at 12:08 PM, Vladimir Litvak
>> > <
[log in to unmask]> wrote:
>> >>
>> >> No, this function is used for detecting eyeblinks in continuous data
>> >> as part of eyeblink correction procedure. See
>> >>
>> >>
https://www.jiscmail.ac.uk/cgi-bin/wa.exe?A2=SPM;adf47ab2.1007
>> >>
>> >> Vladimir
>> >>
>> >> On Fri, Nov 12, 2010 at 5:02 PM, MP <
[log in to unmask]> wrote:
>> >> > Hi all,
>> >> > It may be a very naive question, but does
>> >> > 'spm_eeg_detect_eyeblinks' remove
>> >> > the eye-blinks after detecting them?
>> >> > Thanks
>> >> > - Muhammad
>> >
>> >
>
>