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Works for me. What I did: first load a suitable structural (at a pinch you could load the stat image twice*); add the stat image; use the info dialog to set desired colormap; enter 3D mode; double click on the structural/pial surface image in the overlay list (it should disappear), select the stat image in the overlay list; change the min to some value above zero** , now you should be able to see the surface. * A stat image, because of the range of values, is not well suited to rendering as the pial surface and I'm afraid fslview assumes that's what is intended (sorry!). ** The min value gets used as the threshold value for segmenting the rendered surface. Adjust min to re-threshold as required. NB zero is interpreted as background and so not a useful low threshold value. Dave On 19 Nov 2010, at 16:35, Rajagopalan, Venkateswaran wrote: > Dear David, > > I am posting this message again since I haven't hear from you. I am attaching my fslstats image image file which I am having trouble viewing as a rendered image in 3d viewer. Kindly give me your input and suggestions. I have uploaded the image the ref number is 323361. > > Thanks > > Venkat > > > -----Original Message----- > From: FSL - FMRIB's Software Library on behalf of David Flitney > Sent: Mon 11/15/2010 11:27 AM > To: [log in to unmask] > Subject: Re: [FSL] 3D viewer > > Venkat, > > I think the discussion with Courtney is only relevant to your issues if you too are using remote X11 to view fslview? Note that Courtney's problem actually causes FSLView to crash not just failing to display stuff. > > Otherwise, I think we need to take a quick look at your input images. Would you like to upload a sample to: http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi and send me the reference number? > > On 15 Nov 2010, at 16:13, Rajagopalan, Venkateswaran wrote: > >> Thanks Courtney, >> >> I asked our computer service staff and he tried it in his PC which has different graphics card and it didn't work. Sorry I am not able to following your discussions with Dave is it for your computer. Someone (archives) mentioned that there might be problem with the library files we checked that too, do know what is really happening one time it worked and it didn't work after that. >> >> >> Thanks again, >> >> Venkat > > -- > Dave Flitney, IT Manager > Oxford Centre for Functional MRI of the Brain > E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717 > URL: http://www.fmrib.ox.ac.uk/~flitney > > > > > > =================================== > > P Please consider the environment before printing this e-mail > > Cleveland Clinic is ranked one of the top hospitals > in America by U.S.News & World Report (2009). > Visit us online at http://www.clevelandclinic.org for > a complete listing of our services, staff and > locations. > > > Confidentiality Note: This message is intended for use > only by the individual or entity to which it is addressed > and may contain information that is privileged, > confidential, and exempt from disclosure under applicable > law. If the reader of this message is not the intended > recipient or the employee or agent responsible for > delivering the message to the intended recipient, you are > hereby notified that any dissemination, distribution or > copying of this communication is strictly prohibited. If > you have received this communication in error, please > contact the sender immediately and destroy the material in > its entirety, whether electronic or hard copy. Thank you. > -- Dave Flitney, IT Manager Oxford Centre for Functional MRI of the Brain E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717 URL: http://www.fmrib.ox.ac.uk/~flitney