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Well, you can use the other NIFTI reader and just unzip the files in a wrapper matlab script. Peace, Matt. -----Original Message----- From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Auer, Tibor M.D. Ph.D. Sent: Tuesday, November 02, 2010 12:44 PM To: [log in to unmask] Subject: Re: [FSL] read nii.gz files matlab It works on Linux (ubuntu) just perfect. But how can it be used on Windows? Auer, Tibor M.D. Ph.D. Biomedizinische NMR Forschungs GmbH am Max-Planck Institut für Biophysikalische Chemie Am Fassberg 11 37077 Göttingen Germany Phone/Work: +49-(0)551-201-1725 Phone/Home: +49-(0)551-387-0076 Mobile: +49-(0)176-8012-7921 Mail: [log in to unmask] 2010.11.02. 18:33 keltezéssel, Mark Jenkinson írta: > Hi, > > We have very simple tools for reading and saving nifti images > with matlab. You'll find them in $FSLDIR/etc/matlab > They work with compressed nifti without problems. > > All the best, > Mark > > > On 2 Nov 2010, at 17:17, R. Matthew Hutchison wrote: > >> There is a great matlab toolbox here: >> http://www.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and -analyze-image >> >> >> I am not sure if this is the one you are referring to. >> >> Unfortunately it doesn't read the compressed nifti files (.nii.gz) but >> you can simply uncompress the files to .nii and run them. >> >> -Matt >> >> >> >> On Tue, Nov 2, 2010 at 1:13 PM, Pallavi Karnayana >> <[log in to unmask]> wrote: >>> How can nii.gz files be read in matab? >>> I tried downloading Analyze MRI toolbox and also MRIcro tool. >>> >>> It is not working still. I want to read a bunch of nii.gz files in >>> matlab. >>> Can anyone guide regarding the same? >>> >> >> >> >> -- >> R. Matthew Hutchison, PhD. Candidate >> Centre for Functional and Metabolic Mapping >> Robarts Research Institute >> Cuddy Wing - 9.4T Suite >> P.O. Box 5015, 100 Perth Drive >> London, Ontario, Canada N6A 5K8 >>