Dear All
I have two structures of homo-dimeric protein complex with different DNA.
I want to calculate RMS deviation between second monomer from these two complexes by fixing superposed first monomer.

This I require to know what is the effect of DNA on relative orientation of two monomers in the dimer.

Previously I was using MOLEMAN2 to do this calculation.

Please can you suggest me any other program to do this calculation.

Thanking you
Raj


E. Rajakumara
Postdoctoral Fellow  Strcutural Biology Program  Memorial Sloan-Kettering Cancer Center  New York-10021  NY  001 212 639 7986 (Lab)  001 917 674 6266 (Mobile)