Hi Roser and other FSLers,

Some time ago I posted a similar bedpostx error (reproduced below) but got no answers. 

Queuing post processing stage
Done!
Error: ${FSLDIR}/bin/bedpostx line 281
You have mail in /var/spool/mail/root

Although checking the bedpostx directory it seems fine. The version is FSL 4.1.5 and is being run in rhel5. I have previously run the same dataset in FSL in rhel4 w/o any problems. Is rhel5 the problem source? \

Thanks in advance for any help.

Shantanu

 

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Shantanu Ghosh, PhD

Assistant Professor

Cognitive Science Lab

Indian Institute of Technology Delhi

Hauz Khas

New Delhi 110 016

INDIA

T +91.11.2659.1382

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W http://web.iitd.ac.in/~sghosh/

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From: Roser Sala <[log in to unmask]>
To: [log in to unmask]
Sent: Thu, 23 September, 2010 1:25:21 PM
Subject: [FSL] bespostx strange messages

Hello all, 

we are running bedpostx on healthy subjects data (in FSL v.4.1.5), and we usually get two kinds of 'error' messages :

the fist one:
...
65 slices processed
For some reason the bedpostX process DOES NOT appear
to have successfully completed. Please examine your
results carefully.
/usr/local/fsl/bin/bedpostx: line 250: kill: (32542) - No existe el proceso

and the second one:
....
/usr/local/fsl/bin/bedpostx: line 293:  3257 Seņal definida por el usuario 1        ${subjdir}.bedpostX/monitor
(which would be something like 'signal defined by user 1')

In the bedpostx output directory we have all the files that we are supposed to, and visually checking the results they seem to be ok.

We don't know where do these messages come from, and how can we check the output in a more accurately way

Many thanks, 

Roser.