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It's best to have dedicated NVIDIA (don't have much experience with ATI,
but it is my understanding that they may be more difficult to configire
sometimes).  However, Intel on-board graphics has gotten much better
recently (in fact, Intel releases drivers as open source (guess because
they are not big players in video cards).  I am not sure you'll actually
notice any difference between NVIDIA and Intel integrated, since coot is
not as demanding as the bleeding edge videogames for which high-speed
graphics matters.

I'd recommend to search various linux forums for information about the
laptop you are considering - if it's a fairly new model, there are often
issues you'll need to resolve to get it going.

Ed.

On Sun, 2010-09-19 at 16:45 +0100, wrote:
> Dear all,
> 
> I wanted to know which type of graphics card is more suitable for a notebook which is going to be used for structural biology. Integrated or dedicated? ATI or NVIDIA? At the moment I have to choose between an integrated Intel HD Graphics or a dedicated NVIDIA NVS 3100M Graphics. Any suggestions are highly appreciated.
> 
> Thanks!
> 
> Eric

-- 
"I'd jump in myself, if I weren't so good at whistling."
                               Julian, King of Lemurs