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Gandolla Marta wrote:
> Hi everyone,
>
>    I'd need some help about realignment parameters effect that seems
> to be huge in the acquisition I will now describe.
> We have a 30 secs block design, starting from rest. The patient is
> performing active ankle dorsiflexion during on blocks.
> We did the following preprocessing steps:
> - realignment
> - coreg
> - normalize
> - smooth (6mm)
>
> then we implemented the GLM with a 8 columns design matrix
> (1-condition with the 30 secs block design, 2-7- realign param, 8-
> baseline) and we found zero activation (p<0.01 FWE corrected).
> we then chacked with the 2 columns design matrix (1-condition with the
> 30 secs block design, 2- baseline) and we found a quite important
> activation (fig.1). should we trust this activation? the realignemnt
> param plot along with the block design protocol is shown in fig.2. is
> it possible that all this effect depends on the correlation between
> the realignment parameters and the condition column in the design
> matrix? should trust only the design with the realignement parameters
> as covariats of no interest? we are thinking in this case why we don't
> see any activation... do we miss something?
>
> thanks for your help
> best regards
> marta