Hi,
When I run bet with the -B flag I get the following error message:
/Applications/fsl/bin/bet: line 383: 18901 Segmentation fault ${FSLDIR}/bin/fast -oba 100 ${OUT}_tmp_premask 1>&/dev/null
** ERROR (nifti_image_read): failed to find header file for 'mprage_defaced_brain3_tmp_premask_abias'
** ERROR: nifti_image_open(mprage_defaced_brain3_tmp_premask_abias): bad header info
Error: failed to open file mprage_defaced_brain3_tmp_premask_abias
ERROR: Could not open image mprage_defaced_brain3_tmp_premask_abias
Image Exception : #22 :: Failed to read volume mprage_defaced_brain3_tmp_premask_abias
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/Applications/fsl/bin/bet: line 383: 18909 Abort trap ${FSLDIR}/bin/fslmaths $IN -mul ${OUT}_tmp_premask_abias ${OUT}_tmp_unbiased
Input image mprage_defaced_brain3_tmp_unbiased not valid
Error: input image mprage_defaced_brain3_tmp_unbiased_premask not valid
The results I'm getting seem okay (image seems to have had bias field correction and the mask is much better than without the -B flag). I was just wondering what the error was about and if there would be anything wrong with using the resulting images.
Thanks,
Jeanette
