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Dear Paul! you might want to have a look at http://salilab.org/modeller/ . The stand alone version is free for academia. Christian ___ Dr. Christian Rausch Lehrstuhl für Biologische Chemie Technische Universität München, Germany On Thu, Aug 26, 2010 at 12:03 AM, Paul Kraft <[log in to unmask]> wrote: > > Hello, > I've been using an the on-line homology modeling program Jigsaw-3D, and would like to run it on my own Linux box, but it requires CHARM, which I am unvailable to get because I am currently looking for a faculty position... does anyone know of an open source energy minimization program that can be substituted for CHARM (will GROMOS from SWISS PROT work?). Also is their any open source homology modeling program that includes solvent interactions in the minimization (it seems they all require $$, at least the good one's). Thanks in advance. > Paul > > Dr. Paul Kraft > Structural Biologist > cell 586-596-2770 > email: [log in to unmask] > > > This communication and any attachments contain information which is confidential and may also be privileged. It is for the exclusive use of the intended recipient(s). If you are not the intended recipient(s) please note that any form of disclosure, distribution, copying or use of this communication or the information in it or in any attachments is strictly prohibited and may be unlawful. If you have received this communication in error, please notify the sender and delete the email and destroy any copies of it. > > E-mail communications cannot be guaranteed to be secure or error free, as information could be intercepted, corrupted, amended, lost, destroyed, arrive late or incomplete, or contain viruses. We do not accept liability for any such matters or their consequences. Anyone who communicates with us by e-mail is taken to accept the risks in doing so.