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Dear Michel, On Mon, 24 May 2010 00:28:04 +0200, michel grothe <[log in to unmask]> wrote: > >Dear Mr Gaser, >does this also affect VBM8 analyses designed for GM (or WM) only? That is, should ordinary GM/WM VBM analyses be repeated with the new update? The skull-stripping will slightly change, which also affects the GM images. Thus, I would recommend to rewrite the images with the new version. > >And another (unrelated) question: The regularisation settings for DARTEL have changed from SPM5 to SPM8 (or even in one of the later SPM5 updates(?)). Which regularisation settings are used in the VBM8-toolbox? I have found a difference between SPM8 Dartel and VBM8 Dartel in the last iteration step (that I have overlooked). This is now changed in the new revision 336, which can be downloaded at http://dbm.neuro.uni-jena.de/vbm8/ (or simply use the update function in VBM8). Sorry, for this trouble that will force you to rewrite the data. However, keep in mind that the current VBM8 toolbox is still beta and might be subject to changes. To rewrite the data you can use the option "Write already estimated segmentations". Regards, Christian ____________________________________________________________________________ Christian Gaser, Ph.D. Assistant Professor of Computational Neuroscience Department of Psychiatry Friedrich-Schiller-University of Jena Jahnstrasse 3, D-07743 Jena, Germany Tel: ++49-3641-934752 Fax: ++49-3641-934755 e-mail: [log in to unmask] http://dbm.neuro.uni-jena.de > >Thanks in advance, >Michel > >> Date: Sun, 23 May 2010 10:28:41 +0100 >> From: [log in to unmask] >> Subject: Re: [SPM] Beta Version of VBM8 Toolbox >> To: [log in to unmask] >> >> Dear Paul, >> >> the number of morphological closing steps for the final masking was too low. I have now increased the number iterations in order to fill all holes in CSF. The new update r335 can be loaded via the upload function in VBM8 or at: >> http://dbm.neuro.uni-jena.de/vbm8/ >> >> Regards, >> >> Christian >> ____________________________________________________________________________ >> >> Christian Gaser, Ph.D. >> Assistant Professor of Computational Neuroscience >> Department of Psychiatry >> Friedrich-Schiller-University of Jena >> Jahnstrasse 3, D-07743 Jena, Germany >> Tel: ++49-3641-934752 Fax: ++49-3641-934755 >> e-mail: [log in to unmask] >> >> On Fri, 21 May 2010 14:25:00 +0100, Paul <[log in to unmask]> wrote: >> >> >Dear Gaser >> > >> >Thanks for your great works! This toolbox works well for my data, but i found some CSF segments looks strange after tissue segmentation. >> >The attached file is one participant's CSF segment, as you see, there is a black hole in the ventricle. >> >Could you help me to solve this problem? >> > >> >Thank you >> > >> >Best Regards >> > >> >Paul >> > > >_________________________________________________________________ >http://redirect.gimas.net/?n=M1005xIE82 >Sicher und anonym surfen? Der Internet Explorer 8 macht es m�glich!