linux-vdso.so.1 => (0x00007fff7f52d000)
libselinux.so.1 => /usr/local/fsl-4.1.5/lib/libselinux.so.1
(0x00007f1b7173b000)
libacl.so.1 => /lib/libacl.so.1 (0x00007f1b71533000)
libattr.so.1 => /lib/libattr.so.1 (0x00007f1b7132e000)
libc.so.6 => /lib/libc.so.6 (0x00007f1b70fbf000)
libqt-mt.so.3 => /usr/local/fsl-4.1.5/lib/libqt-mt.so.3
(0x0000003226200000)
libmng.so.1 => /usr/lib/libmng.so.1 (0x00007f1b70d36000)
libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x00007f1b70b11000)
libpng12.so.0 => /usr/lib/libpng12.so.0 (0x00007f1b708eb000)
libz.so.1 => /lib/libz.so.1 (0x00007f1b706d4000)
libXrender.so.1 => /usr/lib/libXrender.so.1 (0x00007f1b704ca000)
libXrandr.so.2 => /usr/lib/libXrandr.so.2 (0x00007f1b702c1000)
libXcursor.so.1 => /usr/lib/libXcursor.so.1 (0x00007f1b700b7000)
libXinerama.so.1 => /usr/lib/libXinerama.so.1
(0x00007f1b6feb5000)
libXft.so.2 => /usr/lib/libXft.so.2 (0x00007f1b6fca0000)
libfreetype.so.6 => /usr/lib/libfreetype.so.6
(0x00007f1b6fa1b000)
libfontconfig.so.1 => /usr/lib/libfontconfig.so.1
(0x00007f1b6f7e9000)
libXext.so.6 => /usr/lib/libXext.so.6 (0x00007f1b6f5d7000)
libX11.so.6 => /usr/lib/libX11.so.6 (0x00007f1b6f2a1000)
libSM.so.6 => /usr/lib/libSM.so.6 (0x00007f1b6f098000)
libICE.so.6 => /usr/lib/libICE.so.6 (0x00007f1b6ee7d000)
libdl.so.2 => /lib/libdl.so.2 (0x00007f1b6ec79000)
libpthread.so.0 => /lib/libpthread.so.0 (0x00007f1b6ea5d000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007f1b6e74d000)
libm.so.6 => /lib/libm.so.6 (0x00007f1b6e4c9000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007f1b6e2b2000)
/lib64/ld-linux-x86-64.so.2 (0x00007f1b7197d000)
liblcms.so.1 => /usr/lib/liblcms.so.1 (0x00007f1b6e07b000)
libXfixes.so.3 => /usr/lib/libXfixes.so.3 (0x00007f1b6de75000)
libexpat.so.1 => /lib/libexpat.so.1 (0x00007f1b6dc4c000)
libXau.so.6 => /usr/lib/libXau.so.6 (0x00007f1b6da49000)
libxcb.so.1 => /usr/lib/libxcb.so.1 (0x00007f1b6d82d000)
libuuid.so.1 => /lib/libuuid.so.1 (0x00007f1b6d628000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00007f1b6d423000)
chuck@doolin:~$
On 4/30/10 2:07 AM, David Flitney wrote:
[log in to unmask]" type="cite">Hi,
Where did you get your FSL from? Did you use apt-get to install
it from the repositories or did you download one of our binary bundles
(the former should be preferred for Ubuntu)? On our Ubuntu VM that
symbol IS present in /lib/libselinux.so.1 so, first guess, environment
context in FEAT is causing your /bin/mv to find a confounding library.
Could you run the following and send me the output:
LD_LIBRARY_PATH=/usr/local/fsl/lib:${LD_LIBRARY_PATH}
ldd /bin/mv
On 29 Apr 2010, at 23:02, Chuck Theobald wrote:
Hi,
We are trying to bring some Ubuntu 9.10 machines into our grid (Gentoo
Linux boxes), but when FEAT jobs hit the Ubuntu nodes the job fails
with the following message:
No f contrasts
WARNING: The passed in varcope file, var_filtered_func_data, contains
voxels inside the mask with zero (or negative) values. These voxels
will be excluded from the analysis.
nevs=1
ntpts=2
ngs=1
nvoxels=299853
Running:
nmaskvoxels=299853
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27
28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51
52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75
76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
100
nmaskvoxels=299853
Saving results
Log directory was: stats
/bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
/bin/mv: symbol lookup error: /bin/mv: undefined symbol:
is_selinux_enabled
cat: stats/dof: No such file or directory
while executing
"exec sh -c "cat stats/dof"
I've run into selinux issues before, with library used by fslview
requiring libselinux.so for some reason. Could this be related? The mv
command works fine in other contexts.
Thank you,
Chuck
--
Dave Flitney, IT Manager
Oxford Centre for Functional MRI of the
Brain
--
Chuck Theobald
System Administrator
The Robert and Beverly Lewis Center for Neuroimaging
University of Oregon
P: 541-346-0343
F: 541-346-0345
