I have been trying to use mosflm in script mode, in a quick-n-dirty effort to pipe some information from labelit.index into a simple data collection strategy. While doing that, I run into the following issue. I have not been able to find a way to read in image information without starting the old gui. Is there a command in the current mosflm versions to run it in shell mode only? Below the script that I have been using.
ipmosflm summary integrate02.sum <<eof
DIRECTORY ../images
TEMPLATE image_###.img
IMAGE 1
HKLOUT integration02.mtz
GENFILE integration02.gen
#detector-take defaults
#UIS_PIXEL 0.102400
#UIS_SIZE 3072
NUSPOT OFF
BEAM 155.400500 158.807700
DISTANCE 299.775600
TWOTHETA 0.0
WAVE 0.977400
#beam
SYNCHROTRON POLARIZATION 0.9
DIVERGENCE 0.100 0.020
DISPERSION 0.0001
MOSAICITY 0.60
SYMMETRY p2
RESOLUTION 3.5
MATRIX integration02.mat
PROFILE OVERLOAD PARTIALS
RASTER 19 19 9 4 4
SEPARATION 1.80 1.80 CLOSE
REFINEMENT RESID 7.5
REFINEMENT INCLUDE PARTIALS RESID 10.0 #High s/n
scanner adsc
strategy auto
stats on
go
end
exit
eof