sometimes change in ph also dissocaites the complex,so you need to screen best buffer ph for your protein complex.
 
atul kumar

On Sun, May 23, 2010 at 8:18 PM, Maia Cherney <[log in to unmask]> wrote:
-------- Original Message --------
Subject:        Is it possible for the Tris buffer to strip the Zn ions from the Zinc Finger motif of a protein?
Date:   Sun, 23 May 2010 08:45:55 -0600
From:   Maia Cherney <[log in to unmask]>
To:     ruheng <[log in to unmask]>



The complex can dissociate without loosing Zn. For example, if you dilute it too much. There is an equilibrium between the concentrations of complex and the individual components.

Maia



Date: Sat, 22 May 2010 11:17:41 +0800
From: [log in to unmask]
Subject: [ccp4bb]
To: [log in to unmask]

Dear all,

Recently, I am working on a complex which includes two protein subunits. The interaction was based on the Zinc Finger motif of one protein. I co-purified the complex by nickel affinity column with one protein bearing a C terminal His tag and the other without any affinity tags. However, the complex was disassociated when applied to size exclusion chromatography. The buffer I use for SEC is 20mM Tris-HCl, 150mM NaCl, 1mM DTT, 5% Glycerol, pH 7.5, whearas the buffer I use for nickel affinity column is 50mM Na2HPO4, 10mM KH2PO4, 137mM NaCl, 2.7mM KCl, 10% Glycerol, pH7.4. So I am wondering is it possible for the Tris buffer to strip the Zn ions from the Zinc Finger motif of one protein that leads to the destruction of the complex?

I will be very appreciated if anyone has some experience in such case and would like to share with me!


Sincerely,

Heng


Institute of Biophysics,
Chinese Academy of Sciences,
Beijing 100101, China

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