Thanks for all the suggestions.<div><br></div><div>I was able to use swiss-pdb viewer to accomplish my goal within 2 minutes of installing!</div><div><br></div><div>Very useful software in general! I didn&#39;t realize all of the tools present.</div>

<div><br></div><div>Thank you everyone!</div><div><br></div><div>Kelly<br clear="all">*******************************************************<br>Kelly Daughtry<br>PhD Candidate<br>Department of Physiology and Biophysics<br>

Boston University School of Medicine<br>590 Commonwealth Ave<br>R 390<br>Boston MA, 02215<br>(P) 617-358-5548<br>*******************************************************<br>
<br><br><div class="gmail_quote">On Wed, May 12, 2010 at 12:46 PM, Scott Pegan <span dir="ltr">&lt;<a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1005%26L%3DCCP4BB%26E%3Dquoted-printable%26P%3D1064273%26B%3D--001636e0a6385b37720486692ced%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">

Kelly,<br><br>You can do it with swiss-model, just have to use the alignment mode.  I will ask for a pdb or RCSB code.  Also, in the past I have found Jigsaw 3D model server to be a comparable tool.<br><br>Scott<div><div>

</div><div class="h5"><br><br><div class="gmail_quote">
On Wed, May 12, 2010 at 10:10 AM, Kelly Daughtry <span dir="ltr">&lt;<a href="mailto:[log in to unmask]" target="_blank"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1005%26L%3DCCP4BB%26E%3Dquoted-printable%26P%3D1064273%26B%3D--001636e0a6385b37720486692ced%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">


Hello all,<div>I would like to thread one protein sequence onto a structure I recently solved, and has not been submitted to the pdb.</div><div><br></div><div>I found the swiss-model website, which is an excellent tool for inputing a template sequence and target sequence (which is what I want to do), but it only allows you to select a PDB ID, and not to upload your own pdb file.</div>




<div><br></div><div>Does anyone know where I can do this online? I&#39;m thisclose to just changing each amino acid in coot (with the amount of searching I&#39;ve done, it&#39;s about equal time!).</div><div><br></div><div>




Thanks in advance,</div><div>Kelly Daughtry</div><div><br clear="all">*******************************************************<br>Kelly Daughtry<br>PhD Candidate<br>Department of Physiology and Biophysics<br>Boston University School of Medicine<br>




590 Commonwealth Ave<br>R 390<br>Boston MA, 02215<br>(P) 617-358-5548<br>*******************************************************<br>
</div>
</blockquote></div><br><br clear="all"><br></div></div><font color="#888888">-- <br>Scott D. Pegan, Ph.D.<br>Assistant Professor<br>Chemistry &amp; Biochemistry<br>University of Denver<br>
</font></blockquote></div><br></div>