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Thanks for all the suggestions. I was able to use swiss-pdb viewer to accomplish my goal within 2 minutes of installing! Very useful software in general! I didn't realize all of the tools present. Thank you everyone! Kelly ******************************************************* Kelly Daughtry PhD Candidate Department of Physiology and Biophysics Boston University School of Medicine 590 Commonwealth Ave R 390 Boston MA, 02215 (P) 617-358-5548 ******************************************************* On Wed, May 12, 2010 at 12:46 PM, Scott Pegan <[log in to unmask]>wrote: > Kelly, > > You can do it with swiss-model, just have to use the alignment mode. I > will ask for a pdb or RCSB code. Also, in the past I have found Jigsaw 3D > model server to be a comparable tool. > > Scott > > > On Wed, May 12, 2010 at 10:10 AM, Kelly Daughtry <[log in to unmask]> wrote: > >> Hello all, >> I would like to thread one protein sequence onto a structure I recently >> solved, and has not been submitted to the pdb. >> >> I found the swiss-model website, which is an excellent tool for inputing a >> template sequence and target sequence (which is what I want to do), but it >> only allows you to select a PDB ID, and not to upload your own pdb file. >> >> Does anyone know where I can do this online? I'm thisclose to just >> changing each amino acid in coot (with the amount of searching I've done, >> it's about equal time!). >> >> Thanks in advance, >> Kelly Daughtry >> >> ******************************************************* >> Kelly Daughtry >> PhD Candidate >> Department of Physiology and Biophysics >> Boston University School of Medicine >> 590 Commonwealth Ave >> R 390 >> Boston MA, 02215 >> (P) 617-358-5548 >> ******************************************************* >> > > > > -- > Scott D. Pegan, Ph.D. > Assistant Professor > Chemistry & Biochemistry > University of Denver >