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Dear Panagiotis,
If this is the case you can use CTF software to swap the fiducial locations
back.
If you look in the ctf bin directory you'll find a number of functions to
look at headpos.
I'm pretty sure the one you want is something like calcheadpos. It even has
a swap option. 
(you can also use this function to simply read head pos to compare with
other subjects).
Best wishes
Gareth



-----Original Message-----
From: SPM (Statistical Parametric Mapping) [mailto:[log in to unmask]] On
Behalf Of Panagiotis Tsiatsis
Sent: 06 April 2010 18:19
To: [log in to unmask]
Subject: [SPM] (Ex)Changing the coordinates of the fiducial coils in CTF-MEG
data

Dear all,

Stupidity is just endless as they say, and it seems that I frequently am
its victim. So it seems that during one MEG recording session, I placed the
left
and the right ear localization coils in the opposite way because I can
see that all my data are flipped. Is there any practical way to
correct that in spm8 or should I just throw this subject's data away? Can I
also practically check somehow that it is really the case that the coils
were flipped?
The MEG system is a CTF one.

Thank you a lot in advance,
Panagiotis