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Thanks for the reply.  The registration only set-up ran as a full analysis.  Forgive the bad full analysis example we sent the wrong file, it should have had a 4d.  We're sending a prestats file which also continued to run through a full analysis.  We would like to see what we can do to only run specified partial analyses.  For some reason, making the changes in the template alone (either gui or command line) still leaves us running full analyses?  What are we missing?  

Thank-you so much Eugene.




On Sun, Apr 11, 2010 at 4:05 PM, Eugene Duff <[log in to unmask]> wrote:
Hi

I'm a little confused: your fullanalysis.txt file has a feat directory as input?

Otherwise, the registration.txt file looks OK I think.  It will overwrite the existing registration in the feat directory that you have provided as input.  Is this what you were expecting?

Eugene

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On 11 April 2010 20:41, Paul Trowbridge <[log in to unmask]> wrote:
We are trying to run separate, partial feat analyses, i.e., prestats, registration only, post-stats, etc. However from both a command-line run file and via the fsl gui all inputs results in a full analysis run.  We think the only difference in the designs are the set fmri(analysis) and set feat_files(1), there may be another setting required that we don't know about. We have the input correct, the design.fsf read according to intended analysis, however full analysis is performed.  We are attaching design.fsf files for a registration only and full analysis run.