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This is strange. So you're getting out+.feat directories being created? What exactly do you mean by making changes in the template alone? Does the FEAT GUI come up in the "Registration Only" format when you load the file up to load? Are the files you're sending the design.fsf files from the newly created full feat directories? Eugene -- Centre for Functional MRI of the Brain (FMRIB) | University of Oxford John Radcliffe Hospital | Headington OX3 9DU | Oxford | UK Ph: +44 (0) 1865 222 523 | Mob: +44 (0) 7946 362 059 | Fax: +44 (0) 1865 222 717 -- On 11 April 2010 21:35, Paul Trowbridge <[log in to unmask]> wrote: > Thanks for the reply. The registration only set-up ran as a full > analysis. Forgive the bad full analysis example we sent the wrong file, it > should have had a 4d. We're sending a prestats file which also continued to > run through a full analysis. We would like to see what we can do to only > run specified partial analyses. For some reason, making the changes in the > template alone (either gui or command line) still leaves us running full > analyses? What are we missing? > > Thank-you so much Eugene. > > > >> >> >> On Sun, Apr 11, 2010 at 4:05 PM, Eugene Duff <[log in to unmask]>wrote: >> >>> Hi >>> >>> I'm a little confused: your fullanalysis.txt file has a feat directory as >>> input? >>> >>> Otherwise, the registration.txt file looks OK I think. It will overwrite >>> the existing registration in the feat directory that you have provided as >>> input. Is this what you were expecting? >>> >>> Eugene >>> >>> -- >>> >>> Centre for Functional MRI of the Brain (FMRIB) | University of Oxford >>> John Radcliffe Hospital | Headington >>> OX3 9DU | Oxford | UK >>> >>> Ph: +44 (0) 1865 222 523 | Mob: +44 (0) 7946 362 059 | Fax: +44 (0) 1865 >>> 222 717 >>> >>> -- >>> >>> >>> >>> On 11 April 2010 20:41, Paul Trowbridge <[log in to unmask]> wrote: >>> >>>> We are trying to run separate, partial feat analyses, i.e., prestats, >>>> registration only, post-stats, etc. However from both a command-line run >>>> file and via the fsl gui all inputs results in a full analysis run. We >>>> think the only difference in the designs are the set fmri(analysis) and set >>>> feat_files(1), there may be another setting required that we don't know >>>> about. We have the input correct, the design.fsf read according to intended >>>> analysis, however full analysis is performed. We are attaching design.fsf >>>> files for a registration only and full analysis run. >>>> >>>> >>>> >>> >> >