Hussain,<br><br>Spheres, dots, non-bonded spheres are for atoms.  Sticks and lines show bonds.  This indicates that your metal isn&#39;t bound to anything.  If you like, feel free to send me the file or a snippet of it and I&#39;ll take a look.  PyMOL does have some weirdness when it comes to figuring out proper bonding, especially in things like heme groups: you might have to do some bond-editing yourself.<br>
<br>Good luck,<br><br>-- Jason<br><br><div class="gmail_quote">On Mon, Apr 12, 2010 at 3:14 PM, Hussain Bhukyagps <span dir="ltr">&lt;<a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1004%26L%3DCCP4BB%26E%3Dquoted-printable%26P%3D3971978%26B%3D--001485e5bfac90b63404840f38e5%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td style="font: inherit;" valign="top"><div><div class="im">Dear Jason Vertrees,<br><br> My ligand is a metal complex.<br><br></div>i followed the way u suggested to me, but still i&#39;m not able to solve it.<br>
<br>it is working for spheres, dots, nb_spheres etc.. But not sticks and lines.<br><br>By the way i&#39;m able to generate <br><br>thank U...<br></div></td></tr></tbody></table><div><div></div><div class="h5"><br>Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download Now! <a href="http://messenger.yahoo.com/download.php" target="_blank">http://messenger.yahoo.com/download.php</a></div>
</div></blockquote></div><br><br clear="all"><br>-- <br>Jason Vertrees, PhD<br>PyMOL Product Manager<br>Schrodinger, LLC<br><br>(e) <a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1004%26L%3DCCP4BB%26E%3Dquoted-printable%26P%3D3971978%26B%3D--001485e5bfac90b63404840f38e5%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a><br>(o) +1 (603) 374-7120<br>