Hi,
Have a look at the documentation on FIRST:
http://www.fmrib.ox.ac.uk/fsl/first/index.html
This shows you, step by step, how to do analyses
and how to check the results.
All the best,
Mark
On 23 Mar 2010, at 22:15, Xiaoying Tang wrote:
> Hi Brian,
>
> Sorry, I didn't notice your response until now. I am quite sorry. I
> think maybe nobody responded to me.
>
> Anyway, can you tell me how to check the registrations? What command
> lines to use?
>
> Best,
> Xiaoying
>
> 2010/3/22 Brian Patenaude <[log in to unmask]>
> Hi,
>
> Have you checked the registrations?
>
> Cheers,
>
> Brian
>
>
>
> > Hi all,
> >
> > I want to use FIRST to extract some structures such as caudate
> from a T1
> > skull-stripped image. I performed the following command lines. But
> the
> > results are obviously not caudate.
> >
> > Commands:
> >
> > /usr/local/fsl/bin/run_first_all -s L_Caud,R_Caud -i
> > amf_091201_10_1_john_ss
> > -o amf_first
> >
> >
> > "amf_091201_10_1_john_ss.img" is my input skull-stripped T1 image.
> >
> > I would be most grateful if someone can answer my problem.
> >
> > Best,
> > Xiaoying
> >
>
