On Tue, Mar 16, 2010 at 12:56 PM, Paul Emsley
<[log in to unmask]> wrote:
Coot is distributed with a copy of the refmac library, which has PDB version 2.3 atom names.
You can override that dictionary by setting up CCP4 in the normal way.
You can further override the dictionary by setting the environment variable COOT_REFMAC_LIB_DIR
So if Phenix distributes a version of the monomer library that has PDB version 3.x atom names then Coot can use that if you point to it.
Unfortunately, the monomer library in Phenix is still using the old atom names - the version 3.x names are handled internally in Python (and Reduce does its own thing anyway).
-Nat
