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Hello everyone, 
   I have one more non-CCP4 related question again. I have been trying to refine a structure using SHELXL at ~1.0A. I added waters using SHELXWAT, however, it seems that the water molecules are not getting refined in the subsequent cycles. (B factor is at 50.00 for all of them). I can also see positive density at all the water positions with COOT.  
   Can anyone let me know, what did I miss. 

Thanks

Ajit B.