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Paul, It seems the distance criteria apply to protein atoms only, not including bound water. Is there a way to include atoms from water molecules in the distance constraint? Yong Paul Emsley <[log in to unmask]> Sent by: CCP4 bulletin board <[log in to unmask]> 02/01/2010 09:02 AM Please respond to Paul Emsley <[log in to unmask]> To [log in to unmask] cc Subject Re: [ccp4bb] Coot- Find water james09 pruza wrote: > > > The find water option in coot is not picking up more that 10 water > molecules but density is there. How can it be sorted out?? By changing the "Find peaks above", "Minimum distance" and "Maximum distance" values in the dialog? Paul.