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You can do either way, but if you run it on the whole series you will need
to make bvecs file and a bvals file that includes all of the volumes.

Peace,

Matt.

-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Ed Gronenschild
Sent: Monday, January 25, 2010 10:20 AM
To: [log in to unmask]
Subject: [FSL] Is averaging of DTI dat necessary?

Hi,

I have a set of 6 series of DTI data, each consisting of 13 volumes,
with volume 1 referring to B=0 and volumes 2-13 referring to
12 different B vectors.
My question is: should I average the 6 series (after correction
of eddy current and movement) before running dtifit or can
I just run dtifit on the whole set of 78 volumes?

Kind regards,
Ed