Hi Paula,

did you check if Coot/bin is in the PATH variable when you start ccp4i?
Maybe the coot executable you run is a wrapper that sets the path which is
not done as you start ccp4i.

Try to type 'findwaters' from the same terminal you start ccp4i from. Does
that yield a 'command not found'?

Tim

--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

GPG Key ID = A46BEE1A

On Tue, 19 Jan 2010, Paula Salgado wrote:

> Hi everyone
>
> I just downloaded and installed the newest ccp4i release, including Coot
> 0.6.0. It all seemed fine, except when I try to run refmac from ccp4i,
> using the "Run Coot:findwaters", process fails with error message;
>
> **************************************************************************
>
> The program run with command: findwaters --pdbin
> "/tmp/psalgado/test_pdb_1.tmp" --hklin "/tmp/psalgado/test_mtz_1.tmp" --f
> DELFWT --phi PHDELWT --pdbout "/tmp/psalgado/test_1.tmp" --sigma 2.0
>
> has failed with error message
>
> couldn't execute "findwaters": no such file or directory
>
> ***************************************************************************
>
>
> #CCP4I TERMINATION STATUS 0 "couldn't execute "findwaters": no such file
> or directory"
>
> #CCP4I TERMINATION TIME 19 Jan 2010 12:39:26
>
> #CCP4I MESSAGE Task failed
>
>
>
> I checked and the Coot/bin directory exists and it contains a
> "findwaters" executable file.
>
> I should add that doing "find waters" within Coot works fine.
>
>
> Any ideas? All help welcomed.
>
>
> Thanks!
>
> Paula
>
> =========================================================
>
>  Dr Paula Salgado
>
>  Division of Molecular Biosciences
>  Department of Life Sciences
>  Faculty of Natural Sciences
>  Biochemistry Building, 5th Floor
>  Imperial College London
>  South Kensington Campus
>  SW7 2AZ
>  London
>
> Tel: 02075945464
> Fax: +44 (0)20 7594 3057
>
>