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Hi Paula, did you check if Coot/bin is in the PATH variable when you start ccp4i? Maybe the coot executable you run is a wrapper that sets the path which is not done as you start ccp4i. Try to type 'findwaters' from the same terminal you start ccp4i from. Does that yield a 'command not found'? Tim -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A On Tue, 19 Jan 2010, Paula Salgado wrote: > Hi everyone > > I just downloaded and installed the newest ccp4i release, including Coot > 0.6.0. It all seemed fine, except when I try to run refmac from ccp4i, > using the "Run Coot:findwaters", process fails with error message; > > ************************************************************************** > > The program run with command: findwaters --pdbin > "/tmp/psalgado/test_pdb_1.tmp" --hklin "/tmp/psalgado/test_mtz_1.tmp" --f > DELFWT --phi PHDELWT --pdbout "/tmp/psalgado/test_1.tmp" --sigma 2.0 > > has failed with error message > > couldn't execute "findwaters": no such file or directory > > *************************************************************************** > > > #CCP4I TERMINATION STATUS 0 "couldn't execute "findwaters": no such file > or directory" > > #CCP4I TERMINATION TIME 19 Jan 2010 12:39:26 > > #CCP4I MESSAGE Task failed > > > > I checked and the Coot/bin directory exists and it contains a > "findwaters" executable file. > > I should add that doing "find waters" within Coot works fine. > > > Any ideas? All help welcomed. > > > Thanks! > > Paula > > ========================================================= > > Dr Paula Salgado > > Division of Molecular Biosciences > Department of Life Sciences > Faculty of Natural Sciences > Biochemistry Building, 5th Floor > Imperial College London > South Kensington Campus > SW7 2AZ > London > > Tel: 02075945464 > Fax: +44 (0)20 7594 3057 > >