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Hi, you can use the nice tool dssp2pdb by James Stroud (http://structure.usc.edu/dssp2pdb) to assign the ss of the DSSP output to your pdb file. See instructions there. HTH Guenter > > I am sorry for this off-topic question. I see it has been discussed > many times, but somehow I got stuck in the very beginning. > > I want to assign ss to my pdb file in DSSP, but I could not find a > server to run it. Does anybody know a webserver where I could run this > kind of tasks? I use iMAC. > > Many thanks! > > Jane -- *********************************** Priv.Doz.Dr. Guenter Fritz Fachbereich Biologie Sektion Naturwissenschaften Universitaet Konstanz http://www.biologie.uni-konstanz.de/fritz Universitaetsstrasse 10 Postfach M665 D-78457 Konstanz e-mail: [log in to unmask] Phone Office: +49-(0)7531 88 3205 Phone Lab : +49-(0)7531 88 3733 Fax: +49-(0)7531 88 2966